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<title>MarvinSketch Applet Examples</title>
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<h1>MarvinSketch Applet Examples</h1>
<h3>Version 5.3.1</h3>
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<ol>
<li>Basic examples
    <ol>
    <li><a HREF="embed.html"><b>Embedding MarvinSketch applet in HTML pages</b></a><br> The basic ways of creating Marvin Applets and embedding them in
HTML pages.</li>
    <li><a HREF="colors.html"><b>Setting canvas colors</b></a><br> The color of the canvas can optionally be modified by applet parameters.</li>
	<li><a HREF="splashscreen.html"><b>Specify a custom splash screen image</b></a><br/>
	Specify a custom splash screen image to the MarvinSketch Applet.</li>
    <li><a href="hydrogens.html"><b>Show all implicit Hydrogen atoms</b></a><br> How to remove explicit hydrogen atoms and show
all implicit hydrogen atoms in applets.</li>
    <li><a HREF="templates.html"><b>Structure templates</b></a><br> Handling of custom and built-in template groups.</li>
    <li><a href="abbrevgroups.html"><b>Abbreviated groups</b></a><br> Replacing the built-in abbreviated group collection with a cutom one.</li>
    <li><a HREF="guicustomization.html"><b>GUI customization</b></a><br> The Graphical User Interface is customized to use the ISIS/Draw-like
configuration.
</li>
    </ol>
    </li>
<li><a HREF="disabling.html"><b>Query atoms, extra bond types, disabling elements</b></a><br> Controlling the type of atoms and bonds to be used in the applet.</li>
<li>Visualization, loading molecules
    <ol>
    <li><a HREF="viewonly.html"><b>Loading a molecule in visualization mode, using magnification</b></a><br>
        Starting the applet in visualization (view only) mode i.e. the editing buttons cannot be seen.</li>
    <li><a HREF="inlineinput.html"><b>Working with inline, compressed molfiles</b></a><br>
        Inline, compressed molfiles can decrease the download time of applets.</li>
    <li><a HREF="js_triggering.html"><b>Triggering molfile download from JavaScript, naming the applet</b></a><br>
        Loading a molecule by pressing a HTML button.</li>
    <li><a HREF="js_io.html"><b>Import/export of built-in and user defined molecule formats in JavaScript</b></a><br>
        Introducing molecule import/export with JavaScript using several molecular formats and HTML buttons.</li>
    <li><a HREF="detach.html"><b>Pure visualization mode I</b></a><br>
        Opening/closing MarvinSketch window by clicking on the image of the molecule.</li>
    <li><a HREF="openwindow.html"><b>Pure visualization mode II</b></a><br>
        Starting with a detached MarvinSketch window.</li>
    <li><a HREF="clean3d.html"><b>Visualizing 3D structures</b></a><br>
        How to convert the input structure to 3D.</li>
    <li><a href="resize.html"><b>Resizeable sketcher</b></a></li>
    </ol>
    </li>
<li>Molecular property calculations
    <ol>
    <li><a href="chemicalterms1.html"><b>Molecular property calculations with Chemical Terms</b></a><br>
        Formulating chemical expressions with JavaScript.
    </li>
    <li><a href="chemicalterms2.html"><b>Calculating molecular properties on the fly</b></a><br>
        Every time the molecule is altered, the Chemical Terms expressions are re-evaluated and the results are updated.
    </li>
    </ol>
    </li>
<li><a name="noliveconnect">Examples for browsers without Java - JavaScript communication</a>
    <ol>
    <li><a href="noliveconnect1.html"><b>Retrieving a structure</b></a><br>
        Sending a structure from MarvinSketch to MarvinView for browsers without LiveConnect support.
    </li>
    <li><a href="noliveconnect2.html"><b>Import/export of structures</b></a><br>
        Import/export of structures for browsers without LiveConnect support.
    </li>
    </ol>
</li>
<li>Case studies - composite real-life examples
    <ol>
    <li><a href="studentexam/index.html"><b>Student examination</b></a><br>
        Student examination example for lone pair and radical electron settings having all helper options disabled.
    </li>
    <li><a href="../view/transfering.html"><b>Molecule transfer</b></a><br>
        Editing the structures of a molecule table with MarvinSketch
    </li>
    </ol>
</li>
</ol>
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